| miRNA | gene name | experiments | ||||||
|---|---|---|---|---|---|---|---|---|
| hsa-miR-93-3p | MYPOP |
|
||||||
| hsa-miR-93-3p | SLC25A23 |
|
||||||
| hsa-miR-93-3p | HASPIN |
|
||||||
| hsa-miR-93-3p | ZC3H18 |
|
||||||
| hsa-miR-93-3p | ENO2 |
|
||||||
| hsa-miR-93-3p | SEL1L3 |
|
||||||
| hsa-miR-93-3p | EEF1A1 |
|
||||||
| hsa-miR-93-3p | CSAG1 |
|
||||||
| hsa-miR-93-3p | MCM3 |
|
||||||
| hsa-miR-93-3p | BAP1 |
|
||||||
| hsa-miR-93-3p | FKBP3 |
|
||||||
| hsa-miR-93-3p | BMPR2 |
|
||||||
| hsa-miR-93-3p | SMC1A |
|
||||||
| hsa-miR-93-3p | RPL5 |
|
||||||
| hsa-miR-93-3p | C1orf21 |
|
||||||
| hsa-miR-93-3p | NCAPD2 |
|
||||||
| hsa-miR-93-3p | GANAB |
|
||||||
| hsa-miR-93-3p | INPP5D |
|
||||||
| hsa-miR-93-3p | EIF4ENIF1 |
|
||||||
| hsa-miR-93-3p | GPR162 |
|
||||||
| hsa-miR-93-3p | SCN1A |
|
||||||
| hsa-miR-93-3p | SREBF1 |
|
||||||
| hsa-miR-93-3p | TULP3 |
|
||||||
| hsa-miR-93-3p | ACIN1 |
|
||||||
| hsa-miR-93-3p | NASP |
|
||||||
| hsa-miR-93-3p | AAGAB |
|
||||||
| hsa-miR-93-3p | FUK |
|
||||||
| hsa-miR-93-3p | FKBP5 |
|
||||||
| hsa-miR-93-3p | AGO1 |
|
||||||
| hsa-miR-93-3p | SUFU |
|
||||||
| hsa-miR-93-3p | OTUB1 |
|
||||||
| hsa-miR-93-3p | UBA2 |
|
||||||
| hsa-miR-93-3p | MCM7 |
|
||||||
| hsa-miR-93-3p | ENAH |
|
||||||
| hsa-miR-93-3p | OXA1L |
|
||||||
| hsa-miR-93-3p | RUNDC3B |
|
||||||
| hsa-miR-93-3p | ZNF44 |
|
||||||
| hsa-miR-93-3p | KIAA1549L |
|
||||||
| hsa-miR-93-3p | CUL2 |
|
||||||
| hsa-miR-93-3p | LAMA4 |
|
||||||
| hsa-miR-93-3p | RRP12 |
|
||||||
| hsa-miR-93-3p | ARHGEF33 |
|
||||||
| hsa-miR-93-3p | PTPN9 |
|
||||||
| hsa-miR-93-3p | FDXACB1 |
|
||||||
| hsa-miR-93-3p | TLK2 |
|
||||||
| hsa-miR-93-3p | FAM120A |
|
||||||
| hsa-miR-93-3p | PPP1R13B |
|
||||||
| hsa-miR-93-3p | PAMR1 |
|
||||||
| hsa-miR-93-3p | TIAM1 |
|
||||||
| hsa-miR-93-3p | DOCK5 |
|
||||||
| hsa-miR-93-3p | ACTN1 |
|
||||||
| hsa-miR-93-3p | DHX9 |
|
||||||
| hsa-miR-93-3p | EXOC4 |
|
||||||
| hsa-miR-93-3p | PARP1 |
|
||||||
| hsa-miR-93-3p | RGPD5 |
|
||||||
| hsa-miR-93-3p | SC5D |
|
||||||
| hsa-miR-93-3p | CENPF |
|
||||||
| hsa-miR-93-3p | TOMM20 |
|
||||||
| hsa-miR-93-3p | HUWE1 |
|
||||||
| hsa-miR-93-3p | HEYL |
|
||||||
| hsa-miR-93-3p | TESK2 |
|
||||||
| hsa-miR-93-3p | CIT |
|
||||||
| hsa-miR-93-3p | TCOF1 |
|
||||||
| hsa-miR-93-3p | ACTB |
|
||||||
| hsa-miR-93-3p | TPD52L2 |
|
||||||
| hsa-miR-93-3p | EPHB4 |
|
||||||
| hsa-miR-93-3p | KLHDC3 |
|
||||||
| hsa-miR-93-3p | WNK1 |
|
||||||
| hsa-miR-93-3p | CTC1 |
|
||||||
| hsa-miR-93-3p | CYCS |
|
||||||
| hsa-miR-93-3p | MAP2K1 |
|
||||||
| hsa-miR-93-3p | C1QBP |
|
||||||
| hsa-miR-93-3p | THUMPD3 |
|
||||||
| hsa-miR-93-3p | GCAT |
|
||||||
| hsa-miR-93-3p | NPM1 |
|
||||||
| hsa-miR-93-3p | PPP1R12A |
|
||||||
| hsa-miR-93-3p | UTP14C |
|
||||||
| hsa-miR-93-3p | CNOT1 |
|
||||||
| hsa-miR-93-3p | DHFR |
|
||||||
| hsa-miR-93-3p | MPP5 |
|
||||||
| hsa-miR-93-3p | LRRC34 |
|
||||||
| hsa-miR-93-3p | HMMR |
|
||||||
| hsa-miR-93-3p | SERBP1 |
|
||||||
| hsa-miR-93-3p | MYCBP |
|
||||||
| hsa-miR-93-3p | GLUD1 |
|
||||||
| hsa-miR-93-3p | HSP90AB1 |
|
||||||
| hsa-miR-93-3p | TARDBP |
|
||||||
| hsa-miR-93-3p | SPTAN1 |
|
||||||
| hsa-miR-93-3p | CTTNBP2NL |
|
||||||
| hsa-miR-93-3p | ATAD5 |
|
||||||
| hsa-miR-93-3p | TUT1 |
|
||||||
| hsa-miR-93-3p | EIF1AD |
|
||||||
| hsa-miR-93-3p | SCAP |
|
||||||
| hsa-miR-93-3p | STAT5B |
|
||||||
| hsa-miR-93-3p | HNRNPUL1 |
|
||||||
| hsa-miR-93-3p | CASP2 |
|
||||||
| hsa-miR-93-3p | ANAPC7 |
|
||||||
| hsa-miR-93-3p | FAM50A |
|
||||||
| hsa-miR-93-3p | MON1B |
|
||||||
| hsa-miR-93-3p | RAB34 |
|
||||||
| hsa-miR-93-3p | KANSL3 |
|
||||||
| hsa-miR-93-3p | NUP62 |
|
||||||
| hsa-miR-93-3p | LRP3 |
|
||||||
| hsa-miR-93-3p | TRIO |
|
||||||
| hsa-miR-93-3p | PRPF8 |
|
||||||
| hsa-miR-93-3p | ARFGAP3 |
|
||||||
| hsa-miR-93-3p | TPRG1L |
|
||||||
| hsa-miR-93-3p | NEMP1 |
|
||||||
| hsa-miR-93-3p | ZNFX1 |
|
||||||
| hsa-miR-93-3p | SLC35A4 |
|
||||||
| hsa-miR-93-3p | MTSS1L |
|
||||||
| hsa-miR-93-3p | EIF4A1 |
|
||||||
| hsa-miR-93-3p | H3F3B |
|
||||||
| hsa-miR-93-3p | FAM98A |
|
||||||
| hsa-miR-93-3p | UNC45A |
|
||||||
| hsa-miR-93-3p | RBM15B |
|
||||||
| hsa-miR-93-3p | USF1 |
|
||||||
| hsa-miR-93-3p | FAR1 |
|
||||||
| hsa-miR-93-3p | PDS5A |
|
||||||
| hsa-miR-93-3p | CDC42 |
|
||||||
| hsa-miR-93-3p | SCRIB |
|
||||||
| hsa-miR-93-3p | VARS |
|
||||||
| hsa-miR-93-3p | TEX261 |
|
||||||
| hsa-miR-93-3p | NUCKS1 |
|
||||||
| hsa-miR-93-3p | FAM193B |
|
||||||
| hsa-miR-93-3p | SUCLA2 |
|
||||||
| hsa-miR-93-3p | JMJD8 |
|
||||||
| hsa-miR-93-3p | NCOA4 |
|
||||||
| hsa-miR-93-3p | KIAA1147 |
|
||||||
| hsa-miR-93-3p | CCNY |
|
||||||
| hsa-miR-93-3p | HSPA5 |
|
||||||
| hsa-miR-93-3p | TAGLN2 |
|
||||||
| hsa-miR-93-3p | ACLY |
|
||||||
| hsa-miR-93-3p | PUF60 |
|
||||||
| hsa-miR-93-3p | LRIG3 |
|
||||||
| hsa-miR-93-3p | DIDO1 |
|
||||||
| hsa-miR-93-3p | ELP1 |
|
||||||
| hsa-miR-93-3p | MAFG |
|
||||||
| hsa-miR-93-3p | RABGAP1 |
|
||||||
| hsa-miR-93-3p | ANKRD27 |
|
||||||
| hsa-miR-93-3p | ZNF703 |
|
||||||
| hsa-miR-93-3p | HYOU1 |
|
||||||
| hsa-miR-93-3p | DMTN |
|
||||||
| hsa-miR-93-3p | PRRC2A |
|
||||||
| hsa-miR-93-3p | SF3B2 |
|
||||||
| hsa-miR-93-3p | EIF4H |
|
||||||
| hsa-miR-93-3p | UBE2Q1 |
|
||||||
| hsa-miR-93-3p | RAB13 |
|
||||||
| hsa-miR-93-3p | ALS2 |
|
||||||
| hsa-miR-93-3p | FAM89B |
|
||||||
| hsa-miR-93-3p | ADRM1 |
|
||||||
| hsa-miR-93-3p | POMGNT1 |
|
||||||
| hsa-miR-93-3p | CDC20 |
|
||||||
| hsa-miR-93-3p | MRPL49 |
|
||||||
| hsa-miR-93-3p | DMWD |
|
||||||
| hsa-miR-93-3p | DNAJC5 |
|
||||||
| hsa-miR-93-3p | WASH3P |
|
||||||
| hsa-miR-93-3p | WDR77 |
|
||||||
| hsa-miR-93-3p | IFT140 |
|
||||||
| hsa-miR-93-3p | GOT2 |
|
||||||
| hsa-miR-93-3p | TRIM28 |
|
||||||
| hsa-miR-93-3p | KIAA1671 |
|
||||||
| hsa-miR-93-3p | PFDN2 |
|
||||||
| hsa-miR-93-3p | QTRT2 |
|
||||||
| hsa-miR-93-3p | CCDC22 |
|
||||||
| hsa-miR-93-3p | ADSL |
|
||||||
| hsa-miR-93-3p | PSMD13 |
|
||||||
| hsa-miR-93-3p | DHX30 |
|
||||||
| hsa-miR-93-3p | MAPRE1 |
|
||||||
| hsa-miR-93-3p | LRRC41 |
|
||||||
| hsa-miR-93-3p | ACSL1 |
|
||||||
| hsa-miR-93-3p | SUPT5H |
|
||||||
| hsa-miR-93-3p | LRBA |
|
||||||
| hsa-miR-93-3p | IRAK1 |
|
||||||
| hsa-miR-93-3p | NCSTN |
|
||||||
| hsa-miR-93-3p | ATIC |
|
||||||
| hsa-miR-93-3p | SIN3A |
|
||||||
| hsa-miR-93-3p | EIF2AK1 |
|
||||||
| hsa-miR-93-3p | NFKBIL1 |
|
||||||
| hsa-miR-93-3p | CBR1 |
|
||||||
| hsa-miR-93-3p | UBE2R2 |
|
||||||
| hsa-miR-93-3p | HACL1 |
|
||||||
| hsa-miR-93-3p | PARD3 |
|
||||||
| hsa-miR-93-3p | ABR |
|
||||||
| hsa-miR-93-3p | ITPRIP |
|
||||||
| hsa-miR-93-3p | PITRM1 |
|
||||||
| hsa-miR-93-3p | NUP160 |
|
||||||
| hsa-miR-93-3p | UBAP2L |
|
||||||
| hsa-miR-93-3p | EEF1D |
|
||||||
| hsa-miR-93-3p | SURF4 |
|
||||||
| hsa-miR-93-3p | SAMD4B |
|
||||||
| hsa-miR-93-3p | ARFGAP1 |
|
||||||
| hsa-miR-93-3p | FYN |
|
||||||
| hsa-miR-93-3p | PLEKHG4 |
|
||||||
| hsa-miR-93-3p | ATP1A1 |
|
||||||
| hsa-miR-93-3p | TMEM42 |
|
||||||
| hsa-miR-93-3p | DAZAP1 |
|
||||||
| hsa-miR-93-3p | TMEM245 |
|
||||||
| hsa-miR-93-3p | RNF4 |
|
||||||
| hsa-miR-93-3p | LMBR1L |
|
||||||
| hsa-miR-93-3p | EIF4EBP1 |
|
||||||
| hsa-miR-93-3p | GPR89B |
|
||||||
| hsa-miR-93-3p | GPR89A |
|
||||||
| hsa-miR-93-3p | CANX |
|
||||||
| hsa-miR-93-3p | SETD9 |
|
||||||
| hsa-miR-93-3p | SMURF2 |
|
||||||
| hsa-miR-93-3p | CCDC115 |
|
||||||
| hsa-miR-93-3p | CCDC86 |
|
||||||
| hsa-miR-93-3p | UNC5C |
|
||||||
| hsa-miR-93-3p | ARHGAP42 |
|
||||||
| hsa-miR-93-3p | ARID2 |
|
||||||
| hsa-miR-93-3p | SELENOS |
|
||||||
| hsa-miR-93-3p | SV2B |
|
||||||
| hsa-miR-93-3p | FOXH1 |
|
||||||
| hsa-miR-93-3p | FAM174B |
|
||||||
| hsa-miR-93-3p | VANGL1 |
|
||||||
| hsa-miR-93-3p | PIWIL2 |
|
||||||
| hsa-miR-93-3p | PDIK1L |
|
||||||
| hsa-miR-93-3p | MYCN |
|
||||||
| hsa-miR-93-3p | KMT2C |
|
||||||
| hsa-miR-93-3p | BLCAP |
|
||||||
| hsa-miR-93-3p | DCAF8 |
|
||||||
| hsa-miR-93-3p | AGO4 |
|
||||||
| hsa-miR-93-3p | PLXNA4 |
|
||||||
| hsa-miR-93-3p | PDYN |
|
||||||
| hsa-miR-93-3p | ZNF790 |
|
||||||
| hsa-miR-93-3p | HRK |
|
||||||
| hsa-miR-93-3p | SRCAP |
|
||||||
| hsa-miR-93-3p | TMEM59 |
|
||||||
| hsa-miR-93-3p | SNX9 |
|
||||||
| hsa-miR-93-3p | ELAVL3 |
|
||||||
| hsa-miR-93-3p | SENP8 |
|
||||||
| hsa-miR-93-3p | KLF8 |
|
||||||
| hsa-miR-93-3p | ZNF573 |
|
||||||
| hsa-miR-93-3p | FER |
|
||||||
| hsa-miR-93-3p | TRPM7 |
|
||||||
| hsa-miR-93-3p | PEAR1 |
|
||||||
| hsa-miR-93-3p | MSH5 |
|
||||||
| hsa-miR-93-3p | HHAT |
|
||||||
| hsa-miR-93-3p | MYO1F |
|
||||||
| hsa-miR-93-3p | NCBP3 |
|
||||||
| hsa-miR-93-3p | KIAA0355 |
|
||||||
| hsa-miR-93-3p | CRCP |
|
||||||
| hsa-miR-93-3p | TECPR2 |
|
||||||
| hsa-miR-93-3p | PHLDA2 |
|
||||||
| hsa-miR-93-3p | GRIK3 |
|
||||||
| hsa-miR-93-3p | DNAJC28 |
|
||||||
| hsa-miR-93-3p | SCN7A |
|
||||||
| hsa-miR-93-3p | GPAT4 |
|
||||||
| hsa-miR-93-3p | SH2D5 |
|
||||||
| hsa-miR-93-3p | SAMD4A |
|
||||||
| hsa-miR-93-3p | YPEL1 |
|
||||||
| hsa-miR-93-3p | NEUROD1 |
|
| authors | journal | year | Pubmed link | title | |
|---|---|---|---|---|---|
| 1 | Helwak et al. | Cell | 2013 | 23622248 | Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. |
| 2 | Pillai et al. | Breast Cancer Res. Treat. | 2014 | 24906430 | HITS-CLIP reveals key regulators of nuclear receptor signaling in breast cancer. |
| 3 | Kishore et al. | Nat. Methods | 2011 | 21572407 | A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins. |
| 4 | Hafner et al. | Cell | 2010 | 20371350 | Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. |
| 5 | Xue et al. | Cell | 2013 | 23313552 | Direct conversion of fibroblasts to neurons by reprogramming PTB-regulated microRNA circuits. |
| 6 | Gottwein et al. | Cell Host Microbe | 2011 | 22100165 | Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines. |
| 7 | Kishore et al. | Genome Biol. | 2013 | 23706177 | Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing. |
| 8 | Haecker et al. | PLoS Pathog. | 2012 | 22927820 | Ago HITS-CLIP expands understanding of Kaposi's sarcoma-associated herpesvirus miRNA function in primary effusion lymphomas. |
| 9 | Lipchina et al. | Genes Dev. | 2011 | 22012620 | Genome-wide identification of microRNA targets in human ES cells reveals a role for miR-302 in modulating BMP response. |
| 10 | Whisnant et al. | MBio | 2013 | 23592263 | In-depth analysis of the interaction of HIV-1 with cellular microRNA biogenesis and effector mechanisms. |
| 11 | Memczak et al. | Nature | 2013 | 23446348 | Circular RNAs are a large class of animal RNAs with regulatory potency. |
| 12 | Skalsky et al. | PLoS Pathog. | 2012 | 22291592 | The viral and cellular microRNA targetome in lymphoblastoid cell lines. |
| 13 | Karginov et al. | Genes Dev. | 2013 | 23824327 | Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates. |
| 14 | Chi et al. | Nature | 2009 | 19536157 | Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. |