| miRNA | gene name | experiments | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| hsa-miR-425-5p | ZNF700 |
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| hsa-miR-425-5p | FAM89A |
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| hsa-miR-425-5p | FAM122B |
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| hsa-miR-425-5p | ZNF417 |
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| hsa-miR-425-5p | BHLHB9 |
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| hsa-miR-425-5p | DHCR7 |
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| hsa-miR-425-5p | MIDN |
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| hsa-miR-425-5p | SHCBP1 |
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| hsa-miR-425-5p | BIRC5 |
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| hsa-miR-425-5p | PPP2CB |
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| hsa-miR-425-5p | CCND1 |
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| hsa-miR-425-5p | YRDC |
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| hsa-miR-425-5p | AP3D1 |
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| hsa-miR-425-5p | DDX6 |
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| hsa-miR-425-5p | LRRC40 |
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| hsa-miR-425-5p | FAM122A |
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| hsa-miR-425-5p | ZNF805 |
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| hsa-miR-425-5p | PPP1R15B |
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| hsa-miR-425-5p | PIP4K2A |
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| hsa-miR-425-5p | BEX4 |
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| hsa-miR-425-5p | CELF2 |
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| hsa-miR-425-5p | WRB |
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| hsa-miR-425-5p | MAP2K6 |
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| hsa-miR-425-5p | TAOK1 |
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| hsa-miR-425-5p | MZT1 |
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| hsa-miR-425-5p | KAT6A |
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| hsa-miR-425-5p | SFT2D1 |
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| hsa-miR-425-5p | BCOR |
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| hsa-miR-425-5p | MED4 |
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| hsa-miR-425-5p | DICER1 |
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| hsa-miR-425-5p | LCOR |
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| hsa-miR-425-5p | CRKL |
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| hsa-miR-425-5p | PDZD8 |
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| hsa-miR-425-5p | IGSF1 |
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| hsa-miR-425-5p | DPYSL2 |
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| hsa-miR-425-5p | KIFAP3 |
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| hsa-miR-425-5p | PLOD2 |
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| hsa-miR-425-5p | TXN2 |
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| hsa-miR-425-5p | RUSC1 |
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| hsa-miR-425-5p | EIF3C |
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| hsa-miR-425-5p | LRP11 |
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| hsa-miR-425-5p | PRR13 |
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| hsa-miR-425-5p | ARIH1 |
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| hsa-miR-425-5p | ZBTB21 |
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| hsa-miR-425-5p | CCDC144NL |
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| hsa-miR-425-5p | PPRC1 |
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| hsa-miR-425-5p | QKI |
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| hsa-miR-425-5p | COPS7B |
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| hsa-miR-425-5p | CAND1 |
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| hsa-miR-425-5p | GSK3B |
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| hsa-miR-425-5p | DENR |
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| hsa-miR-425-5p | CLU |
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| hsa-miR-425-5p | EIF3G |
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| hsa-miR-425-5p | SMARCD1 |
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| hsa-miR-425-5p | USMG5 |
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| hsa-miR-425-5p | WASF2 |
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| hsa-miR-425-5p | ZNF148 |
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| hsa-miR-425-5p | ZBTB10 |
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| hsa-miR-425-5p | THOP1 |
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| hsa-miR-425-5p | CKS1B |
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| hsa-miR-425-5p | FOXK2 |
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| hsa-miR-425-5p | HSP90AA1 |
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| hsa-miR-425-5p | PPAT |
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| hsa-miR-425-5p | ASCC3 |
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| hsa-miR-425-5p | VPS39 |
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| hsa-miR-425-5p | NPNT |
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| hsa-miR-425-5p | RABL6 |
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| hsa-miR-425-5p | RUFY2 |
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| hsa-miR-425-5p | SNRNP200 |
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| hsa-miR-425-5p | BAZ2A |
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| hsa-miR-425-5p | MED22 |
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| hsa-miR-425-5p | RPS28 |
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| hsa-miR-425-5p | RRM2 |
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| hsa-miR-425-5p | PSMD8 |
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| hsa-miR-425-5p | INPP5E |
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| hsa-miR-425-5p | SLC25A3 |
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| hsa-miR-425-5p | GNB5 |
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| hsa-miR-425-5p | WDR6 |
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| hsa-miR-425-5p | NADK |
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| hsa-miR-425-5p | PTEN |
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| hsa-miR-425-5p | THRB |
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| hsa-miR-425-5p | OCRL |
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| hsa-miR-425-5p | LDHA |
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| hsa-miR-425-5p | CREBZF |
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| hsa-miR-425-5p | AFF4 |
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| hsa-miR-425-5p | EXOG |
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| hsa-miR-425-5p | FGFR3 |
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| hsa-miR-425-5p | TACC3 |
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| hsa-miR-425-5p | MAFB |
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| hsa-miR-425-5p | SPRED1 |
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| hsa-miR-425-5p | RAB31 |
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| hsa-miR-425-5p | YARS |
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| hsa-miR-425-5p | SH3PXD2A |
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| hsa-miR-425-5p | RNF168 |
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| hsa-miR-425-5p | EOGT |
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| hsa-miR-425-5p | CDC25B |
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| hsa-miR-425-5p | ATP5G3 |
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| hsa-miR-425-5p | RBM8A |
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| hsa-miR-425-5p | FOXN3 |
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| hsa-miR-425-5p | ZC3H11A |
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| hsa-miR-425-5p | PPP4R3A |
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| hsa-miR-425-5p | RPL7L1 |
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| hsa-miR-425-5p | STMN1 |
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| hsa-miR-425-5p | GAN |
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| hsa-miR-425-5p | SOD2 |
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| hsa-miR-425-5p | FRY |
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| hsa-miR-425-5p | SIGLEC14 |
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| hsa-miR-425-5p | LDHD |
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| hsa-miR-425-5p | PLSCR4 |
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| hsa-miR-425-5p | EPM2AIP1 |
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| hsa-miR-425-5p | SYNCRIP |
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| hsa-miR-425-5p | NRAS |
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| hsa-miR-425-5p | MAP3K5 |
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| hsa-miR-425-5p | E2F3 |
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| hsa-miR-425-5p | RPS21 |
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| hsa-miR-425-5p | SLC16A1 |
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| hsa-miR-425-5p | FOXJ3 |
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| hsa-miR-425-5p | PNMA8A |
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| hsa-miR-425-5p | CERS6 |
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| hsa-miR-425-5p | SHROOM1 |
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| hsa-miR-425-5p | ACACB |
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| hsa-miR-425-5p | PLXNA3 |
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| hsa-miR-425-5p | ORMDL2 |
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| hsa-miR-425-5p | TTC39B |
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| hsa-miR-425-5p | MDM2 |
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| hsa-miR-425-5p | TNFRSF10B |
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| hsa-miR-425-5p | CYB561 |
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| hsa-miR-425-5p | SPPL2A |
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| hsa-miR-425-5p | FAM196B |
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| hsa-miR-425-5p | FAM114A1 |
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| hsa-miR-425-5p | SDHAF2 |
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| hsa-miR-425-5p | ZHX3 |
|
| authors | journal | year | Pubmed link | title | |
|---|---|---|---|---|---|
| 1 | Hafner et al. | Cell | 2010 | 20371350 | Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. |
| 2 | Kishore et al. | Nat. Methods | 2011 | 21572407 | A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins. |
| 3 | Rio-Machin et al. | Leukemia | 2013 | 23174883 | Downregulation of specific miRNAs in hyperdiploid multiple myeloma mimics the oncogenic effect of IgH translocations occurring in the non-hyperdiploid subtype. |
| 4 | Helwak et al. | Cell | 2013 | 23622248 | Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. |
| 5 | Ma et al. | Mol. Cancer | 2014 | 24571667 | NF-kappaB-dependent microRNA-425 upregulation promotes gastric cancer cell growth by targeting PTEN upon IL-1β induction. |
| 6 | Wojcicka et al. | PLoS ONE | 2014 | 24849932 | Epigenetic regulation of thyroid hormone receptor beta in renal cancer. |
| 7 | Whisnant et al. | MBio | 2013 | 23592263 | In-depth analysis of the interaction of HIV-1 with cellular microRNA biogenesis and effector mechanisms. |
| 8 | Gottwein et al. | Cell Host Microbe | 2011 | 22100165 | Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines. |
| 9 | Haecker et al. | PLoS Pathog. | 2012 | 22927820 | Ago HITS-CLIP expands understanding of Kaposi's sarcoma-associated herpesvirus miRNA function in primary effusion lymphomas. |
| 10 | Xue et al. | Cell | 2013 | 23313552 | Direct conversion of fibroblasts to neurons by reprogramming PTB-regulated microRNA circuits. |
| 11 | Farazi et al. | Genome Biol. | 2014 | 24398324 | Identification of distinct miRNA target regulation between breast cancer molecular subtypes using AGO2-PAR-CLIP and patient datasets. |
| 12 | Memczak et al. | Nature | 2013 | 23446348 | Circular RNAs are a large class of animal RNAs with regulatory potency. |
| 13 | Lipchina et al. | Genes Dev. | 2011 | 22012620 | Genome-wide identification of microRNA targets in human ES cells reveals a role for miR-302 in modulating BMP response. |
| 14 | Karginov et al. | Genes Dev. | 2013 | 23824327 | Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates. |
| 15 | Kishore et al. | Genome Biol. | 2013 | 23706177 | Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing. |
| 16 | Chi et al. | Nature | 2009 | 19536157 | Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. |