Precursor miRCarta

hsa-20530-8853.1

Accession hsa-20530-8853.1
Organism Homo sapiens
Genome GRCh38.p10
Location 3:49,013,825-49,013,886 (+)
miRNA m-20530
miRNA m-8853
Sequence (5' -> 3')
(62 nts)
CCCACGCACUCACAGCUGUUUGUAACCAUAUCUCCUCGGUACGUGCUGUGGCUGUGUGGGGC
MFE -27.10 kcal/mol
first miRCarta version 1.0
last miRCarta version 1.1
Clusters (10 kb)
(5 precursors)
hsa-20530-8853.1
hsa-95-258.1
hsa-22258-17922.1
hsa-48-413.1
hsa-3477-2989.1

Predicted Structure

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CAACCACAGGCUCAGCCCACGCACUCACAGCUGUUUGUAACCAUAUCUCCUCGGUACGUGCUGUGGCUGUGUGGGGCAUUGGCACCCCAGGU0200400600
RPMMone mismatchno mismatch
CAACCACAGGCUCAGCCCACGCACUCACAGCUGUUUGUAACCAUAUCUCCUCGGUACGUGCUGUGGCUGUGUGGGGCAUUGGCACCCCAGGU0100020003000
number of readsone mismatchno mismatch

Genomic context

GCF_000001405.36_GRCh38.p10 3:49,003,810-49,023,90149,004,00049,006,00049,008,00049,010,00049,012,00049,014,00049,016,00049,018,00049,020,00049,022,000
Gene legend:
protein coding
miRCarta_miRNA
miRNA

References

Authors Journal Year Pubmed link Title
1 Fehlmann et al. Bioinformatics 2018 29281000 A high-resolution map of the human small non-coding transcriptome.
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