Precursor miRCarta

hsa-6550-5439.1

Accession hsa-6550-5439.1
Organism Homo sapiens
Genome GRCh38.p10
Location 13:32,176,085-32,176,135 (+)
miRNA m-6550
miRNA m-5439
Sequence (5' -> 3')
(51 nts)
AAGGAGAGUUUUAAAGCCCAGGGUCAAGUCUGGGCUCUCGAACUCUCCUCC
MFE -29.10 kcal/mol
first miRCarta version 1.0
last miRCarta version 1.1
Clusters (10 kb)
(3 precursors)
hsa-6550-5439.1
hsa-6033-6227.1
hsa-15597-6227.1

Predicted Structure

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:1empty:1Uempty:1empty:2empty:2Cempty:2empty:3empty:3Cempty:3empty:4empty:4Aempty:4empty:5empty:5Cempty:5empty:6empty:6Aempty:6empty:7empty:7Gempty:7empty:8empty:8Uempty:8empty:9empty:9Cempty:9empty:10empty:10Aempty:10empty:11empty:11Cempty:11empty:12empty:12Aempty:12empty:13empty:13Cempty:13empty:14empty:14Aempty:14empty:15empty:15Aempty:15m-6550empty:16Am-6550m-6550empty:17Am-6550m-6550empty:18Gm-6550m-6550empty:19Gm-6550m-6550empty:20Am-6550m-6550empty:21Gm-6550m-6550empty:22Am-6550m-6550empty:23Gm-6550m-6550empty:24Um-6550m-6550empty:25Um-6550m-6550empty:26Um-6550m-6550empty:27Um-6550m-6550empty:28Am-6550m-6550empty:29Am-6550m-6550empty:30Am-6550m-6550empty:31Gm-6550m-6550empty:32Cm-6550m-6550empty:33Cm-6550m-6550empty:34Cm-6550m-6550empty:35Am-6550m-6550empty:36Gm-6550m-6550empty:37Gm-6550empty:38empty:38Gempty:38empty:39empty:39Uempty:39empty:40empty:40Cempty:40empty:41empty:41Aempty:41empty:42empty:42Aempty:42empty:43empty:43Gempty:43empty:44empty:44Uempty:44empty:45empty:45Cempty:45m-5439empty:46Um-5439m-5439empty:47Gm-5439m-5439empty:48Gm-5439m-5439empty:49Gm-5439m-5439empty:50Cm-5439m-5439empty:51Um-5439m-5439empty:52Cm-5439m-5439empty:53Um-5439m-5439empty:54Cm-5439m-5439empty:55Gm-5439m-5439empty:56Am-5439m-5439empty:57Am-5439m-5439empty:58Cm-5439m-5439empty:59Um-5439m-5439empty:60Cm-5439m-5439empty:61Um-5439m-5439empty:62Cm-5439m-5439empty:63Cm-5439m-5439empty:64Um-5439m-5439empty:65Cm-5439m-5439empty:66Cm-5439empty:67empty:67Cempty:67empty:68empty:68Cempty:68empty:69empty:69Aempty:69empty:70empty:70Gempty:70empty:71empty:71Gempty:71empty:72empty:72Uempty:72empty:73empty:73Uempty:73empty:74empty:74Uempty:74empty:75empty:75Gempty:75empty:76empty:76Gempty:76empty:77empty:77Aempty:77empty:78empty:78Cempty:78empty:79empty:79Uempty:79empty:80empty:80Cempty:80empty:81empty:81Uempty:811020304050607080
UCCACAGUCACACAAAAGGAGAGUUUUAAAGCCCAGGGUCAAGUCUGGGCUCUCGAACUCUCCUCCCCAGGUUUGGACUCU0200400
RPMMone mismatchno mismatch
UCCACAGUCACACAAAAGGAGAGUUUUAAAGCCCAGGGUCAAGUCUGGGCUCUCGAACUCUCCUCCCCAGGUUUGGACUCU05001000
number of readsone mismatchno mismatch

Genomic context

GCF_000001405.36_GRCh38.p10 13:32,166,070-32,186,15032,168,00032,170,00032,172,00032,174,00032,176,00032,178,00032,180,00032,182,00032,184,00032,186,000
Gene legend:

References

Authors Journal Year Pubmed link Title
1 Backes et al. Nucleic Acids Res. 2016 26635395 Prioritizing and selecting likely novel miRNAs from NGS data.
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