Precursor miRBase

rno-mir-540 (MI0003524)

Accession MI0003524
Name rno-mir-540
similar to following miRCarta precursors rno-25195-25194.1
Organism Rattus norvegicus
Genome Rnor_5.0
Location chr6:142,868,379-142,868,462 (+)
miRNA rno-miR-540-5p
miRNA rno-miR-540-3p
Sequence (5' -> 3')
(84 nts)
CCCUGGGGCUGGGCCAAGGGUCACCCUCUGACUCUGUGGCCAAGGGUAGACAGGUCAGAGGUCGAUCCUGGGCCUACUCUGGGG
MFE -53.90 kcal/mol
first miRBase version 8.0
last miRBase version 21.0
Clusters (10 kb)
(10 precursors)
rno-mir-493
rno-mir-337
rno-mir-3544
rno-mir-540
rno-mir-665
rno-mir-431
rno-mir-433
rno-mir-127
rno-mir-3543-1
rno-mir-434-1
Family mir-540 (MIPF0000212)
Experiments
experiment Pubmed link
SOLiD 20403161
External DBs
Gene symbol Mir540
NCBI Gene 100314255

Predicted Structure

References

Authors Journal Year Pubmed link Title
1 Sewer et al. BMC Bioinformatics 2005 16274478 Identification of clustered microRNAs using an ab initio prediction method.
2 Linsen et al. BMC Genomics 2010 20403161 Small RNA expression and strain specificity in the rat.