Precursor miRBase

hsa-mir-3198-2 (MI0017335)

Accession MI0017335
Name hsa-mir-3198-2
similar to following miRCarta precursors hsa-1167.1
Organism Homo sapiens
Genome GRCh38.p10
Location chr12:54,231,397-54,231,476 (-)
miRNA hsa-miR-3198
Sequence (5' -> 3')
(80 nts)
GACUCUGCUCUCACUGUUCACCCAGCACUAGCAGUACCAGAUGGUUCUGUGGAGUCCUGGGGAAUGGAGAGAGCACAGUC
MFE -42.60 kcal/mol
first miRBase version 17.0
last miRBase version 21.0
Clusters (10 kb)
(1 precursors)
hsa-mir-3198-2
Family mir-3198 (MIPF0001216)
Experiments
experiment Pubmed link
Illumina 20300190 21199797
External DBs
Gene symbol MIR3198-2
NCBI Gene 100616400

External tools

Links
HMDD

Predicted Structure

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GACUCUGCUCUCACUGUUCACCCAGCACUAGCAGUACCAGAUGGUUCUGUGGAGUCCUGGGGAAUGGAGAGAGCACAGUC0200040006000
RPMMone mismatchno mismatch
GACUCUGCUCUCACUGUUCACCCAGCACUAGCAGUACCAGAUGGUUCUGUGGAGUCCUGGGGAAUGGAGAGAGCACAGUC05k10k15k
number of readsone mismatchno mismatch

References

Authors Journal Year Pubmed link Title
1 Stark et al. PLoS ONE 2010 20300190 Characterization of the Melanoma miRNAome by Deep Sequencing.
2 Persson et al. Cancer Res. 2011 21199797 Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene.
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