Changelog miRCarta

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miRCarta v1.1

general information

Database version v1.1
Release date July 23, 2018
program version v1.5-webserver

integrated data

miRBase v1.1-v21
NCBI Gene 2016/10/06
Ensembl 2017/05/29
miRTarBase 6.1
microT-CDS 5.0
TargetScan 7.1
Expression data processed data by miRMaster
in total: 18,035 experiments
Organism assembly data for 148 organisms

features

  • integrated additional miRNA candidates from miRMaster publication
  • added links to miRPathDB for novel human miRNA candidates
  • added additional references for miRNA/precursor candidates integrated from literature [1][2]

bugfixes

  • fixed some annotations in GFF3 files (in some cases when a miRNA sequence was several times contained within a precursor, all of these were added, although only one of them was originally annotated)
  • removed duplicate miRNA output in GFF3 files
  • output of miRNAs in GFF3 files are now in 5p -> 3p order after their corresponding precursor
  • removed non-functional MTIs integrated from miRTarBase

miRCarta v1.0

general information

Database version v1.0
Release date Aug. 3, 2017
program version v1.01

integrated data

miRBase v1.1-v21
NCBI Gene 2016/10/06
Ensembl 2017/05/29
miRTarBase 6.1
microT-CDS 5.0
TargetScan 7.1
Expression data processed data by miRMaster
in total: 18,035 experiments
Organism assembly data for 148 organisms

features

  • re-mapped known miRNAs from miRBase to newer genome assemblies for 148 organisms
  • integrated target predictions and validated targets from TargetScan, microT-CDS and miRTarBase
  • integrated expression data (human) for >18,000 small RNA-seq experiments
  • genomic context visualization is available for all 148 organisms in miRCarta
  • integrated novel candidates from literature [1][2][3] and miRMaster

bugfixes

  • N/A
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