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Search for miRNAs / precursors

miRCarta miRNA/precursor accessions

Organisms

Caenorhabditis elegans Danio rerio Homo sapiens Mus musculus Rattus norvegicus Acyrthosiphon pisum Aedes aegypti Aegilops tauschii Amborella trichopoda Amphimedon queenslandica Anolis carolinensis Anopheles gambiae Apis mellifera Arabidopsis lyrata Arabidopsis thaliana Ascaris suum Bombyx mori Bos taurus Brachypodium distachyon Branchiostoma belcheri Branchiostoma floridae Brassica napus Brassica oleracea Brassica rapa Brugia malayi Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis remanei Canis familiaris Capitella teleta Capra hircus Carica papaya Chlamydomonas reinhardtii Ciona intestinalis Ciona savignyi Citrus clementina Citrus sinensis Cricetulus griseus Cucumis melo Culex quinquefasciatus Cyprinus carpio Daphnia pulex Dictyostelium discoideum Drosophila ananassae Drosophila erecta Drosophila grimshawi Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila sechellia Drosophila simulans Drosophila virilis Drosophila willistoni Drosophila yakuba Echinococcus granulosus Echinococcus multilocularis Ectocarpus siliculosus Eptesicus fuscus Equus caballus Fugu rubripes Gallus gallus Glycine max Glycine soja Gorilla gorilla Gossypium arboreum Gossypium hirsutum Gossypium raimondii Gyrodactylus salaris Haemonchus contortus Helianthus annuus Heliconius melpomene Hevea brasiliensis Hordeum vulgare Human immunodeficiency virus 1 Ictalurus punctatus Ixodes scapularis Linum usitatissimum Locusta migratoria Lottia gigantea Lotus japonicus Lytechinus variegatus Macaca mulatta Macaca nemestrina Macropus eugenii Malus domestica Manduca sexta Manihot esculenta Medicago truncatula Monodelphis domestica Nasonia giraulti Nasonia longicornis Nasonia vitripennis Nematostella vectensis Nicotiana tabacum Oikopleura dioica Ophiophagus hannah Ornithorhynchus anatinus Oryctolagus cuniculus Oryza sativa Oryzias latipes Ovis aries Pan paniscus Pan troglodytes Panagrellus redivivus Paralichthys olivaceus Patiria miniata Petromyzon marinus Phaeodactylum tricornutum Phaseolus vulgaris Physcomitrella patens Phytophthora infestans Phytophthora ramorum Phytophthora sojae Plutella xylostella Pongo abelii Populus trichocarpa Pristionchus pacificus Prunus persica Pygathrix bieti Rhipicephalus microplus Ricinus communis Saccoglossus kowalevskii Salmo salar Sarcophilus harrisii Schistosoma japonicum Schistosoma mansoni Schmidtea mediterranea Selaginella moellendorffii Solanum lycopersicum Solanum tuberosum Sorghum bicolor Strigamia maritima Strongylocentrotus purpuratus Strongyloides ratti Sus scrofa Taeniopygia guttata Tetranychus urticae Tetraodon nigroviridis Theobroma cacao Tribolium castaneum Triticum aestivum Tupaia chinensis Vigna unguiculata Vitis vinifera Xenopus laevis Xenopus tropicalis Zea mays

Entity type*

miRNAs precursors both

Contains sequence

this search allows for partial matches, i.e. hsa-1088-335 will retrieve all precursors with hsa-1088-335 in the name, e.g. hsa-1088-335.1, hsa-1088-335.2, etc

Filter options for precursors (optional)

expression

mapped reads from X samples

at least X RPMM for highest read stack in precursor

clusters

cluster size of

kb

with at least

precursors

output options (optional)

if you select one of these options no HTML output is created, instead you can download a zip file

Output options

results table as csv (tab-separated)

fasta file(s) with found entities

gff3 file(s) for found entities