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miRBase miRNA/precursor names or accessions

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Contains sequence

this search allows for partial matches, i.e. let-7 will retrieve all miRNAs and precursors with let-7 in the name

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expression

mapped reads from X samples

at least X RPMM for highest read stack in precursor

clusters

cluster size of

with at least

precursors

output options (optional) if you select one of these options no HTML output is created, instead you can download a zip file

Output options

results table as csv (tab-separated)

fasta file(s) with found entities

gff3 file(s) for found entities

Caenorhabditis elegans
Danio rerio
Homo sapiens
Mus musculus
Rattus norvegicus
Acacia auriculiformis
Acacia mangium
Acyrthosiphon pisum
Aedes aegypti
Aegilops tauschii
Amborella trichopoda
Amphimedon queenslandica
Anolis carolinensis
Anopheles gambiae
Apis mellifera
Aquilegia caerulea
Arabidopsis lyrata
Arabidopsis thaliana
Arachis hypogaea
Artibeus jamaicensis
Ascaris suum
Ateles geoffroyi
Avicennia marina
Bandicoot papillomatosis carcinomatosis virus type 1
Bandicoot papillomatosis carcinomatosis virus type 2
BK polyomavirus
Bombyx mori
Bos taurus
Bovine foamy virus
Bovine herpesvirus 1
Bovine herpesvirus 5
Bovine leukemia virus
Brachypodium distachyon
Branchiostoma belcheri
Branchiostoma floridae
Brassica napus
Brassica oleracea
Brassica rapa
Brugia malayi
Bruguiera cylindrica
Bruguiera gymnorhiza
Caenorhabditis brenneri
Caenorhabditis briggsae
Caenorhabditis remanei
Canis familiaris
Capitella teleta
Capra hircus
Carica papaya
Cerebratulus lacteus
Chlamydomonas reinhardtii
Ciona intestinalis
Ciona savignyi
Citrus clementina
Citrus reticulata
Citrus sinensis
Citrus trifoliata
Cricetulus griseus
Cucumis melo
Culex quinquefasciatus
Cunninghamia lanceolata
Cynara cardunculus
Cyprinus carpio
Daphnia pulex
Dictyostelium discoideum
Digitalis purpurea
Drosophila ananassae
Drosophila erecta
Drosophila grimshawi
Drosophila melanogaster
Drosophila mojavensis
Drosophila persimilis
Drosophila pseudoobscura
Drosophila sechellia
Drosophila simulans
Drosophila virilis
Drosophila willistoni
Drosophila yakuba
Duck enteritis virus
Echinococcus granulosus
Echinococcus multilocularis
Ectocarpus siliculosus
Elaeis guineensis
Epstein Barr virus
Eptesicus fuscus
Equus caballus
Festuca arundinacea
Fugu rubripes
Gallus gallus
Glottidia pyramidata
Glycine max
Glycine soja
Gorilla gorilla
Gossypium arboreum
Gossypium herbaceum
Gossypium hirsutum
Gossypium raimondii
Gyrodactylus salaris
Haemonchus contortus
Haliotis rufescens
Helianthus annuus
Helianthus argophyllus
Helianthus ciliaris
Helianthus exilis
Helianthus paradoxus
Helianthus petiolaris
Helianthus tuberosus
Heliconius melpomene
Herpes B virus
Herpes Simplex Virus 1
Herpes Simplex Virus 2
Herpesvirus of turkeys
Herpesvirus saimiri strain A11
Hevea brasiliensis
Hippoglossus hippoglossus
Hordeum vulgare
Human cytomegalovirus
Human herpesvirus 6B
Human immunodeficiency virus 1
Hydra magnipapillata
Ictalurus punctatus
Infectious laryngotracheitis virus
Ixodes scapularis
JC polyomavirus
Kaposi sarcoma-associated herpesvirus
Lagothrix lagotricha
Lemur catta
Leucosolenia complicata
Linum usitatissimum
Locusta migratoria
Lottia gigantea
Lotus japonicus
Lytechinus variegatus
Macaca mulatta
Macaca nemestrina
Macropus eugenii
Malus domestica
Manduca sexta
Manihot esculenta
Mareks disease virus type 1
Mareks disease virus type 2
Marsupenaeus japonicus
Medicago truncatula
Merkel cell polyomavirus
Monodelphis domestica
Mouse cytomegalovirus
Mouse gammaherpesvirus 68
Nasonia giraulti
Nasonia longicornis
Nasonia vitripennis
Nematostella vectensis
Nicotiana tabacum
Oikopleura dioica
Ophiophagus hannah
Ornithorhynchus anatinus
Oryctolagus cuniculus
Oryza sativa
Oryzias latipes
Ovis aries
Pan paniscus
Pan troglodytes
Panagrellus redivivus
Panax ginseng
Paralichthys olivaceus
Patiria miniata
Petromyzon marinus
Phaeodactylum tricornutum
Phaseolus vulgaris
Physcomitrella patens
Phytophthora infestans
Phytophthora ramorum
Phytophthora sojae
Picea abies
Pinus densata
Pinus taeda
Plutella xylostella
Pongo abelii
Populus euphratica
Populus trichocarpa
Pristionchus pacificus
Prunus persica
Pseudorabies virus
Pygathrix bieti
Rehmannia glutinosa
Rhesus lymphocryptovirus
Rhesus monkey rhadinovirus
Rhipicephalus microplus
Ricinus communis
Saccharum officinarum
Saccharum sp.
Saccoglossus kowalevskii
Saguinus labiatus
Salmo salar
Salvia sclarea
Sarcophilus harrisii
Schistosoma japonicum
Schistosoma mansoni
Schmidtea mediterranea
Selaginella moellendorffii
Simian virus 40
Solanum lycopersicum
Solanum tuberosum
Sorghum bicolor
Strigamia maritima
Strongylocentrotus purpuratus
Strongyloides ratti
Sus scrofa
Sycon ciliatum
Symphalangus syndactylus
Taeniopygia guttata
Terebratulina retusa
Tetranychus urticae
Tetraodon nigroviridis
Theobroma cacao
Tribolium castaneum
Triticum aestivum
Triticum turgidum
Tupaia chinensis
Vigna unguiculata
Vitis vinifera
Xenopus laevis
Xenopus tropicalis
Xenoturbella bocki
Zea mays

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